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Detecting natural selection by empirical comparison to random regions of the genome. Hum. Mol. Genet.. Yu F, Keinan A, Chen H, Ferland RJ, Hill RS, Mignault AA, Walsh CA, Reich D.  18:4853–4867 (2009)   Abstract
Population Genomic Analysis of 962 Whole Genome Sequences of Humans Reveals Natural Selection in Non-Coding Regions. PLoS ONE. Yu F, Lu J, Liu X, Gazave E, Chang D, Raj S, Hunter-Zinck H, Blekhman R, Arbiza L, Van Hout C et al..  10:e0121644 (2015)   Abstract
Dietary adaptation of FADS genes in Europe varied across time and geography.. Nature ecology & evolution. Ye K, Gao F, Wang D, Bar-Yosef O, Keinan A.  1:167 (2017)   Abstract
Reply to Just et al.: Mitochondrial DNA heteroplasmy could be reliably detected with massively parallel sequencing technologies.. Proceedings of the National Academy of Sciences of the United States of America. Ye K, Lu J, Ma F, Keinan A, Gu Z.  111(43):E4548-50 (2014)  
Extensive pathogenicity of mitochondrial heteroplasmy in healthy human individuals.. Proceedings of the National Academy of Sciences of the United States of America. Ye K, Lu J, Ma F, Keinan A, Gu Z.   (2014)   Abstract
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The genetic history of Cochin Jews from India.. Human genetics. Waldman YY, Biddanda A, Dubrovsky M, Campbell CL, Oddoux C, Friedman E, Atzmon G, Halperin E, Ostrer H, Keinan A.   (2016)   Abstract
The Genetics of Bene Israel from India Reveals Both Substantial Jewish and Indian Ancestry.. PloS one. Waldman YY, Biddanda A, Davidson NR, Billing-Ross P, Dubrovsky M, Campbell CL, Oddoux C, Friedman E, Atzmon G, Halperin E et al..  11(3):e0152056 (2016)   Abstract
Selection for translation efficiency on synonymous polymorphisms in recent human evolution. Genome Biol Evol. Waldman YY, Tuller T, Keinan A, Ruppin E.  3:749–761 (2011)   Abstract
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Strong Constraint on Human Genes Escaping X-Inactivation Is Modulated by their Expression Level and Breadth in Both Sexes. Molecular Biology and Evolution. Slavney A, Arbiza L, Clark AG, Keinan A.  33(2):384-393 (2015)   Abstract
The utility of ancient human DNA for improving allele age estimates, with implications for demographic models and tests of natural selection.. Journal of human evolution. Sams AJ, Hawks J, Keinan A.   (2014)   Abstract
Neural processing of counting in evolved spiking and McCulloch-Pitts agents. Artif. Life. Saggie-Wexler K, Keinan A, Ruppin E.  12:1–16 (2006)   Abstract
Solving a delayed response task with spiking and McCulloch-Pitts agents. Advances in Artificial Life. Saggie K, Keinan A, Ruppin E.  :199–208 (2003)   Abstract
Spikes that count: rethinking spikiness in neurally embedded systems. Neurocomputing. Saggie K, Keinan A, Ruppin E.  58:303–311 (2004)   Abstract
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Indigenous Arabs are descendants of the earliest split from ancient Eurasian populations.. Genome research. Rodriguez-Flores JL, Fakhro K, Agosto-Perez F, Ramstetter MD, Arbiza L, Vincent TL, Robay A, Malek JA, Suhre K, Chouchane L et al..  26(2):151-62 (2016)   Abstract
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Clustered mutations in hominid genome evolution are consistent with APOBEC3G enzymatic activity. Genome Research. Pinto Y, Gabay O, Arbiza L, Sams AJ, Keinan A, Levanon EY.   (2016)  
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The history of African gene flow into Southern Europeans, Levantines, and Jews. PLoS Genet.. Moorjani P, Patterson N, Hirschhorn JN, Keinan A, Hao L, Atzmon G, Burns E, Ostrer H, Price AL, Reich D.  7:e1001373 (2011)   Abstract
X-inactivation informs variance-based testing for X-linked association of a quantitative trait. BMC Genomics. Ma L, Hoffman G, Keinan A.  16:241 (2015)  
Knowledge-driven analysis identifies a gene-gene interaction affecting high-density lipoprotein cholesterol levels in multi-ethnic populations. PLoS Genet.. Ma L, Brautbar A, Boerwinkle E, Sing CF, Clark AG, Keinan A.  8:e1002714 (2012)   Abstract
Biological Knowledge-Driven Analysis of Epistasis in Human GWAS with Application to Lipid Traits. Epistasis. Ma L, Keinan A, Clark AG.  1253:35-45 (2015)   Abstract
Interaction between SNPs in the RXRA and near ANGPTL3 gene region inhibits apoB reduction after statin-fenofibric acid therapy in individuals with mixed dyslipidemia. J. Lipid Res.. Ma L, Ballantyne CM, Belmont JW, Keinan A, Brautbar A.  53:2425–2428 (2012)   Abstract
Analysis of Multiple Association Studies Provides Evidence of an Expression QTL Hub in Gene-Gene Interaction Network Affecting HDL Cholesterol Levels.. PloS one. Ma L, Ballantyne C, Brautbar A, Keinan A.  9(3):e92469 (2014)   Abstract
Gene-based testing of interactions in association studies of quantitative traits. PLoS Genet.. Ma L, Clark AG, Keinan A.  9:e1003321 (2013)   Abstract
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Crowdsourced genealogies and genomes.. Science (New York, N.Y.). Lussier AA, Keinan A.  360(6385):153-154 (2018)  
Sex-averaged recombination and mutation rates on the X chromosome: a comment on Labuda et al. Am. J. Hum. Genet.. Lohmueller KE, Degenhardt JD, Keinan A.  86:978–980;authorreply980-981 (2010)   Abstract
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Positive Selection on a Regulatory Insertion-Deletion Polymorphism in FADS2 Influences Apparent Endogenous Synthesis of Arachidonic Acid.. Molecular Biology and Evolution. Kothapalli KSD, Ye K, Gadgil MS, Carlson SE, O'Brien KO, Zhang JY, Park HG, Ojukwu K, Zou J, Hyon SS et al..  33(7):1726-39 (2016)   Abstract