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A
A map of human genome variation from population-scale sequencing.. Nature. Abecasis GR, Altshuler D, Auton A, Brooks LD, Durbin RM, Gibbs RA, Hurles ME, McVean GA.  467(7319):1061-73 (2010)   Abstract
An integrated map of genetic variation from 1,092 human genomes.. Nature. Abecasis GR, Auton A, Brooks LD, DePristo MA, Durbin RM, Handsaker RE, Kang HM, Marth GT, McVean GA.  491(7422):56-65 (2012)   Abstract
Integrating common and rare genetic variation in diverse human populations. Nature. Altshuler DM, Gibbs RA, Peltonen L, Altshuler DM, Gibbs RA, Peltonen L, Dermitzakis E, Schaffner SF, Yu F, Peltonen L et al..  467:52–58 (2010)   Abstract
NRE: a tool for exploring neutral loci in the human genome. BMC Bioinformatics. Arbiza L, Zhong E, Keinan A.  13(1):301 (2012)   Abstract
Genome-wide inference of natural selection on human transcription factor binding sites. Nat. Genet.. Arbiza L, Gronau I, Aksoy BA, Hubisz MJ, Gulko B, Keinan A, Siepel A.  45:723–729 (2013)   Abstract
Contrasting X-linked and autosomal diversity across 14 human populations.. American journal of human genetics. Arbiza L, Gottipati S, Siepel A, Keinan A.  94(6):827-44 (2014)   Abstract
Combining evidence of natural selection with association analysis increases power to detect malaria-resistance variants. Am. J. Hum. Genet.. Ayodo G, Price AL, Keinan A, Ajwang A, Otieno MF, Orago ASS, Patterson N, Reich D.  81:234–242 (2007)   Abstract
B
Mitochondrial DNA variants correlate with symptoms in myalgic encephalomyelitis/chronic fatigue syndrome.. Journal of translational medicine. Billing-Ross P, Germain A, Ye K, Keinan A, Gu Z, Hanson MR.  14(1):19 (2016)   Abstract
C
Predicting signatures of "synthetic associations" and "natural associations" from empirical patterns of human genetic variation. PLoS Comput. Biol.. Chang D, Keinan A.  8:e1002600 (2012)   Abstract
Accounting for eXentricities: Analysis of the X Chromosome in GWAS Reveals X-Linked Genes Implicated in Autoimmune Diseases.. PloS one. Chang D, Gao F, Slavney A, Ma L, Waldman YY, Sams AJ, Billing-Ross P, Madar A, Spritz R, Keinan A.  9(12):e113684 (2014)   Abstract
Principal component analysis characterizes shared pathogenetics from genome-wide association studies.. PLoS computational biology. Chang D, Keinan A.  10(9):e1003820 (2014)   Abstract
D
Association between rs2294020 in X-linked CCDC22 and susceptibility to autoimmune diseases with focus on systemic lupus erythematosus.. Immunology letters. D'Amico F, Skarmoutsou E, Lo LJ, Granata M, Trovato C, Rossi GA, Bellocchi C, Marchini M, Scorza R, Mazzarino MC et al..  181:58-62 (2017)   Abstract
The variant call format and VCFtools.. Bioinformatics (Oxford, England). Danecek P, Auton A, Abecasis G, Albers CA, Banks E, DePristo MA, Handsaker RE, Lunter G, Marth GT, Sherry ST et al..  27(15):2156-8 (2011)   Abstract
Genome sequencing and analysis of admixed genomes of African and Mexican ancestry: implications for personal ancestry reconstruction and multi-ethnic medical genomics. Genome Biology. De La Vega FM, Bryc K, Degehnardt JD, Musharoff S, Kidd JM, Seth V, Stanley S, Brisbin A, Keinan A, Clark A et al..  11:O4 (2010)   Abstract
G
Neurocontroller analysis via evolutionary network minimization. Artif. Life. Ganon Z, Keinan A, Ruppin E.  12:435–448 (2006)   Abstract
Evolutionary network minimization: Adaptive implicit pruning of successful agents. Advances in Artificial Life. Ganon Z, Keinan A, Ruppin E.  :319–327 (2003)   Abstract
Explosive genetic evidence for explosive human population growth.. Current opinion in genetics & development. Gao F, Keinan A.  41:130-139 (2016)   Abstract
High burden of private mutations due to explosive human population growth and purifying selection. BMC Genomics. Gao F, Keinan A.  15(Suppl 4)(S3) (2014)   Abstract
Inference of Super-exponential Human Population Growth via Efficient Computation of the Site Frequency Spectrum for Generalized Models. Genetics. Gao F, Keinan A.  202:235–245 (2016)   Abstract
XWAS: a toolset for genetic data analysis and association studies of the X chromosome. Journal of Heredity. Gao F, Chang D, Biddanda A, Ma L, Guo Y, Zhou Z, Keinan A.  106(5):6 (2015)  
Utilizing Rare and X-Linked Variants for Inference of Population Size History and Association Studies of Complex Diseases. Gao F.   (2017)   Abstract
Rare LPL gene variants attenuate triglyceride reduction and HDL cholesterol increase in response to fenofibric acid therapy in individuals with mixed dyslipidemia.. Atherosclerosis. Gao F, Ballantyne C, Ma L, Virani SS, Keinan A, Brautbar A.  234(2):249-253 (2014)   Abstract
Neutral genomic regions refine models of recent rapid human population growth.. Proceedings of the National Academy of Sciences of the United States of America. Gazave E, Ma L, Chang D, Coventry A, Gao F, Muzny D, Boerwinkle E, Gibbs RA, Sing CF, Clark AG et al..  111(2):757-62 (2014)   Abstract
Population growth inflates the per-individual number of deleterious mutations and reduces their mean effect.. Genetics. Gazave E, Chang D, Clark AG, Keinan A.  195(3):969-78 (2013)   Abstract
Analyses of X-linked and autosomal genetic variation in population-scale whole genome sequencing. Nat. Genet.. Gottipati S, Arbiza L, Siepel A, Clark AG, Keinan A.  43:741–743 (2011)   Abstract