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2003
Evolutionary network minimization: Adaptive implicit pruning of successful agents. Advances in Artificial Life. Ganon Z, Keinan A, Ruppin E.  :319–327 (2003)   Abstract
Solving a delayed response task with spiking and McCulloch-Pitts agents. Advances in Artificial Life. Saggie K, Keinan A, Ruppin E.  :199–208 (2003)   Abstract
Controlled analysis of neurocontrollers with informational lesioning. Philos Trans A Math Phys Eng Sci. Keinan A, Meilijson I, Ruppin E.  361:2123–2144 (2003)   Abstract
2004
Analyzing evolved fault-tolerant neurocontrollers. Proceedings of the ninth international conference on the simulation and synthesis of living systems (ALIFE9). Keinan A.  :557–562 (2004)   Abstract
Are Scale-Free Networks Functionally Robust? Keinan A, Ruppin E.   (2004)  
Causal localization of neural function: the Shapley value method. Neurocomputing. Keinan A, Hilgetag CC, Meilijson I, Ruppin E.  58:215–222 (2004)   Abstract
Fair localization of function via multi-lesion analysis. Neuroinformatics. Keinan A, Kaufman A, Sachs N, Hilgetag CC, Ruppin E.  2:163–168 (2004)   Abstract
Spikes that count: rethinking spikiness in neurally embedded systems. Neurocomputing. Saggie K, Keinan A, Ruppin E.  58:303–311 (2004)   Abstract
Fair attribution of functional contribution in artificial and biological networks. Neural Comput. Keinan A, Sandbank B, Hilgetag CC, Meilijson I, Ruppin E.  16:1887–1915 (2004)   Abstract
2005
Quantitative analysis of genetic and neuronal multi-perturbation experiments. PLoS Comput. Biol.. Kaufman A, Keinan A, Meilijson I, Kupiec M, Ruppin E.  1(6):e64 (2005)   Abstract
Localization of Function via Multi-Perturbation Analysis: Theory And Applications for the Analysis of Neural Networks. Raymond and Beverly Sackler Faculty of Exact Sciences School of Computer Science. Keinan A.  Doctor of Philosophy:157 (2005)  
2006
Axiomatic scalable neurocontroller analysis via the Shapley value. Artif. Life. Keinan A, Sandbank B, Hilgetag CC, Meilijson I, Ruppin E.  12:333–352 (2006)   Abstract
Neural processing of counting in evolved spiking and McCulloch-Pitts agents. Artif. Life. Saggie-Wexler K, Keinan A, Ruppin E.  12:1–16 (2006)   Abstract
Neurocontroller analysis via evolutionary network minimization. Artif. Life. Ganon Z, Keinan A, Ruppin E.  12:435–448 (2006)   Abstract
2007
Combining evidence of natural selection with association analysis increases power to detect malaria-resistance variants. Am. J. Hum. Genet.. Ayodo G, Price AL, Keinan A, Ajwang A, Otieno MF, Orago ASS, Patterson N, Reich D.  81:234–242 (2007)   Abstract
Who does what: Taking measures. Statistical and Process Models for Cognitive Neuroscience and Aging. Keinan A, Kaufman A, Hilgetag CC, Meilijson I, Ruppin E.  :163 (2007)  
Measurement of the human allele frequency spectrum demonstrates greater genetic drift in East Asians than in Europeans. Nat. Genet.. Keinan A, Mullikin JC, Patterson N, Reich D.  39:1251–1255 (2007)   Abstract
2009
Accelerated genetic drift on chromosome X during the human dispersal out of Africa. Nat. Genet.. Keinan A, Mullikin JC, Patterson N, Reich D.  41:66–70 (2009)   Abstract
Detecting natural selection by empirical comparison to random regions of the genome. Hum. Mol. Genet.. Yu F, Keinan A, Chen H, Ferland RJ, Hill RS, Mignault AA, Walsh CA, Reich D.  18:4853–4867 (2009)   Abstract
2010
Genome sequencing and analysis of admixed genomes of African and Mexican ancestry: implications for personal ancestry reconstruction and multi-ethnic medical genomics. Genome Biology. De La Vega FM, Bryc K, Degehnardt JD, Musharoff S, Kidd JM, Seth V, Stanley S, Brisbin A, Keinan A, Clark A et al..  11:O4 (2010)   Abstract
Human population differentiation is strongly correlated with local recombination rate. PLoS Genet.. Keinan A, Reich D.  6:e1000886 (2010)   Abstract
Integrating common and rare genetic variation in diverse human populations. Nature. Altshuler DM, Gibbs RA, Peltonen L, Altshuler DM, Gibbs RA, Peltonen L, Dermitzakis E, Schaffner SF, Yu F, Peltonen L et al..  467:52–58 (2010)   Abstract
Sex-averaged recombination and mutation rates on the X chromosome: a comment on Labuda et al. Am. J. Hum. Genet.. Lohmueller KE, Degenhardt JD, Keinan A.  86:978–980;authorreply980-981 (2010)   Abstract
Can a sex-biased human demography account for the reduced effective population size of chromosome X in non-Africans? Mol. Biol. Evol.. Keinan A, Reich D.  27:2312–2321 (2010)   Abstract
2011
Analyses of X-linked and autosomal genetic variation in population-scale whole genome sequencing. Nat. Genet.. Gottipati S, Arbiza L, Siepel A, Clark AG, Keinan A.  43:741–743 (2011)   Abstract