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Journal Article
Gene-based testing of interactions in association studies of quantitative traits. PLoS Genet.. Ma L, Clark AG, Keinan A.  9:e1003321 (2013)   Abstract
The genetic history of Cochin Jews from India.. Human genetics. Waldman YY, Biddanda A, Dubrovsky M, Campbell CL, Oddoux C, Friedman E, Atzmon G, Halperin E, Ostrer H, Keinan A.   (2016)   Abstract
The Genetics of Bene Israel from India Reveals Both Substantial Jewish and Indian Ancestry.. PloS one. Waldman YY, Biddanda A, Davidson NR, Billing-Ross P, Dubrovsky M, Campbell CL, Oddoux C, Friedman E, Atzmon G, Halperin E et al..  11(3):e0152056 (2016)   Abstract
Genome sequencing and analysis of admixed genomes of African and Mexican ancestry: implications for personal ancestry reconstruction and multi-ethnic medical genomics. Genome Biology. De La Vega FM, Bryc K, Degehnardt JD, Musharoff S, Kidd JM, Seth V, Stanley S, Brisbin A, Keinan A, Clark A et al..  11:O4 (2010)   Abstract
Genome-wide inference of natural selection on human transcription factor binding sites. Nat. Genet.. Arbiza L, Gronau I, Aksoy BA, Hubisz MJ, Gulko B, Keinan A, Siepel A.  45:723–729 (2013)   Abstract
High burden of private mutations due to explosive human population growth and purifying selection. BMC Genomics. Gao F, Keinan A.  15(Suppl 4)(S3) (2014)   Abstract
The history of African gene flow into Southern Europeans, Levantines, and Jews. PLoS Genet.. Moorjani P, Patterson N, Hirschhorn JN, Keinan A, Hao L, Atzmon G, Burns E, Ostrer H, Price AL, Reich D.  7:e1001373 (2011)   Abstract
Human population differentiation is strongly correlated with local recombination rate. PLoS Genet.. Keinan A, Reich D.  6:e1000886 (2010)   Abstract
Indigenous Arabs are descendants of the earliest split from ancient Eurasian populations.. Genome research. Rodriguez-Flores JL, Fakhro K, Agosto-Perez F, Ramstetter MD, Arbiza L, Vincent TL, Robay A, Malek JA, Suhre K, Chouchane L et al..  26(2):151-62 (2016)   Abstract
Inference of Super-exponential Human Population Growth via Efficient Computation of the Site Frequency Spectrum for Generalized Models. Genetics. Gao F, Keinan A.  202:235–245 (2016)   Abstract
Integrating common and rare genetic variation in diverse human populations. Nature. Altshuler DM, Gibbs RA, Peltonen L, Altshuler DM, Gibbs RA, Peltonen L, Dermitzakis E, Schaffner SF, Yu F, Peltonen L et al..  467:52–58 (2010)   Abstract
Interaction between SNPs in the RXRA and near ANGPTL3 gene region inhibits apoB reduction after statin-fenofibric acid therapy in individuals with mixed dyslipidemia. J. Lipid Res.. Ma L, Ballantyne CM, Belmont JW, Keinan A, Brautbar A.  53:2425–2428 (2012)   Abstract
Knowledge-driven analysis identifies a gene-gene interaction affecting high-density lipoprotein cholesterol levels in multi-ethnic populations. PLoS Genet.. Ma L, Brautbar A, Boerwinkle E, Sing CF, Clark AG, Keinan A.  8:e1002714 (2012)   Abstract
Measurement of the human allele frequency spectrum demonstrates greater genetic drift in East Asians than in Europeans. Nat. Genet.. Keinan A, Mullikin JC, Patterson N, Reich D.  39:1251–1255 (2007)   Abstract
Mitochondrial DNA variants correlate with symptoms in myalgic encephalomyelitis/chronic fatigue syndrome.. Journal of translational medicine. Billing-Ross P, Germain A, Ye K, Keinan A, Gu Z, Hanson MR.  14(1):19 (2016)   Abstract
Neural processing of counting in evolved spiking and McCulloch-Pitts agents. Artif. Life. Saggie-Wexler K, Keinan A, Ruppin E.  12:1–16 (2006)   Abstract
Neurocontroller analysis via evolutionary network minimization. Artif. Life. Ganon Z, Keinan A, Ruppin E.  12:435–448 (2006)   Abstract
Neutral genomic regions refine models of recent rapid human population growth.. Proceedings of the National Academy of Sciences of the United States of America. Gazave E, Ma L, Chang D, Coventry A, Gao F, Muzny D, Boerwinkle E, Gibbs RA, Sing CF, Clark AG et al..  111(2):757-62 (2014)   Abstract
NRE: a tool for exploring neutral loci in the human genome. BMC Bioinformatics. Arbiza L, Zhong E, Keinan A.  13(1):301 (2012)   Abstract
Population genetic inference from personal genome data: impact of ancestry and admixture on human genomic variation. Am. J. Hum. Genet.. Kidd JM, Gravel S, Byrnes J, Moreno-Estrada A, Musharoff S, Bryc K, Degenhardt JD, Brisbin A, Sheth V, Chen R et al..  91:660–671 (2012)   Abstract
Population Genomic Analysis of 962 Whole Genome Sequences of Humans Reveals Natural Selection in Non-Coding Regions. PLoS ONE. Yu F, Lu J, Liu X, Gazave E, Chang D, Raj S, Hunter-Zinck H, Blekhman R, Arbiza L, Van Hout C et al..  10:e0121644 (2015)   Abstract
Population growth inflates the per-individual number of deleterious mutations and reduces their mean effect.. Genetics. Gazave E, Chang D, Clark AG, Keinan A.  195(3):969-78 (2013)   Abstract
Positive Selection on a Regulatory Insertion-Deletion Polymorphism in FADS2 Influences Apparent Endogenous Synthesis of Arachidonic Acid.. Molecular Biology and Evolution. Kothapalli KSD, Ye K, Gadgil MS, Carlson SE, O'Brien KO, Zhang JY, Park HG, Ojukwu K, Zou J, Hyon SS et al..  33(7):1726-39 (2016)   Abstract
Predicting signatures of "synthetic associations" and "natural associations" from empirical patterns of human genetic variation. PLoS Comput. Biol.. Chang D, Keinan A.  8:e1002600 (2012)   Abstract
Principal component analysis characterizes shared pathogenetics from genome-wide association studies.. PLoS computational biology. Chang D, Keinan A.  10(9):e1003820 (2014)   Abstract