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2014
Accounting for eXentricities: Analysis of the X Chromosome in GWAS Reveals X-Linked Genes Implicated in Autoimmune Diseases.. PloS one. Chang D, Gao F, Slavney A, Ma L, Waldman YY, Sams AJ, Billing-Ross P, Madar A, Spritz R, Keinan A.  9(12):e113684 (2014)   Abstract
Analysis of Multiple Association Studies Provides Evidence of an Expression QTL Hub in Gene-Gene Interaction Network Affecting HDL Cholesterol Levels.. PloS one. Ma L, Ballantyne C, Brautbar A, Keinan A.  9(3):e92469 (2014)   Abstract
High burden of private mutations due to explosive human population growth and purifying selection. BMC Genomics. Gao F, Keinan A.  15(Suppl 4)(S3) (2014)   Abstract
2013
Population growth inflates the per-individual number of deleterious mutations and reduces their mean effect.. Genetics. Gazave E, Chang D, Clark AG, Keinan A.  195(3):969-78 (2013)   Abstract
Gene-based testing of interactions in association studies of quantitative traits. PLoS Genet.. Ma L, Clark AG, Keinan A.  9:e1003321 (2013)   Abstract
Genome-wide inference of natural selection on human transcription factor binding sites. Nat. Genet.. Arbiza L, Gronau I, Aksoy BA, Hubisz MJ, Gulko B, Keinan A, Siepel A.  45:723–729 (2013)   Abstract
2012
Interaction between SNPs in the RXRA and near ANGPTL3 gene region inhibits apoB reduction after statin-fenofibric acid therapy in individuals with mixed dyslipidemia. J. Lipid Res.. Ma L, Ballantyne CM, Belmont JW, Keinan A, Brautbar A.  53:2425–2428 (2012)   Abstract
Knowledge-driven analysis identifies a gene-gene interaction affecting high-density lipoprotein cholesterol levels in multi-ethnic populations. PLoS Genet.. Ma L, Brautbar A, Boerwinkle E, Sing CF, Clark AG, Keinan A.  8:e1002714 (2012)   Abstract
NRE: a tool for exploring neutral loci in the human genome. BMC Bioinformatics. Arbiza L, Zhong E, Keinan A.  13(1):301 (2012)   Abstract
Population genetic inference from personal genome data: impact of ancestry and admixture on human genomic variation. Am. J. Hum. Genet.. Kidd JM, Gravel S, Byrnes J, Moreno-Estrada A, Musharoff S, Bryc K, Degenhardt JD, Brisbin A, Sheth V, Chen R et al..  91:660–671 (2012)   Abstract
Predicting signatures of "synthetic associations" and "natural associations" from empirical patterns of human genetic variation. PLoS Comput. Biol.. Chang D, Keinan A.  8:e1002600 (2012)   Abstract
Recent explosive human population growth has resulted in an excess of rare genetic variants. Science. Keinan A, Clark AG.  336:740–743 (2012)   Abstract
2011
Analyses of X-linked and autosomal genetic variation in population-scale whole genome sequencing. Nat. Genet.. Gottipati S, Arbiza L, Siepel A, Clark AG, Keinan A.  43:741–743 (2011)   Abstract
The history of African gene flow into Southern Europeans, Levantines, and Jews. PLoS Genet.. Moorjani P, Patterson N, Hirschhorn JN, Keinan A, Hao L, Atzmon G, Burns E, Ostrer H, Price AL, Reich D.  7:e1001373 (2011)   Abstract
Selection for translation efficiency on synonymous polymorphisms in recent human evolution. Genome Biol Evol. Waldman YY, Tuller T, Keinan A, Ruppin E.  3:749–761 (2011)   Abstract
2010
Can a sex-biased human demography account for the reduced effective population size of chromosome X in non-Africans? Mol. Biol. Evol.. Keinan A, Reich D.  27:2312–2321 (2010)   Abstract
Sex-averaged recombination and mutation rates on the X chromosome: a comment on Labuda et al. Am. J. Hum. Genet.. Lohmueller KE, Degenhardt JD, Keinan A.  86:978–980;authorreply980-981 (2010)   Abstract
Genome sequencing and analysis of admixed genomes of African and Mexican ancestry: implications for personal ancestry reconstruction and multi-ethnic medical genomics. Genome Biology. De La Vega FM, Bryc K, Degehnardt JD, Musharoff S, Kidd JM, Seth V, Stanley S, Brisbin A, Keinan A, Clark A et al..  11:O4 (2010)   Abstract
Human population differentiation is strongly correlated with local recombination rate. PLoS Genet.. Keinan A, Reich D.  6:e1000886 (2010)   Abstract
Integrating common and rare genetic variation in diverse human populations. Nature. Altshuler DM, Gibbs RA, Peltonen L, Altshuler DM, Gibbs RA, Peltonen L, Dermitzakis E, Schaffner SF, Yu F, Peltonen L et al..  467:52–58 (2010)   Abstract
2009
Accelerated genetic drift on chromosome X during the human dispersal out of Africa. Nat. Genet.. Keinan A, Mullikin JC, Patterson N, Reich D.  41:66–70 (2009)   Abstract
Detecting natural selection by empirical comparison to random regions of the genome. Hum. Mol. Genet.. Yu F, Keinan A, Chen H, Ferland RJ, Hill RS, Mignault AA, Walsh CA, Reich D.  18:4853–4867 (2009)   Abstract
2007
Measurement of the human allele frequency spectrum demonstrates greater genetic drift in East Asians than in Europeans. Nat. Genet.. Keinan A, Mullikin JC, Patterson N, Reich D.  39:1251–1255 (2007)   Abstract
Combining evidence of natural selection with association analysis increases power to detect malaria-resistance variants. Am. J. Hum. Genet.. Ayodo G, Price AL, Keinan A, Ajwang A, Otieno MF, Orago ASS, Patterson N, Reich D.  81:234–242 (2007)   Abstract
Who does what: Taking measures. Statistical and Process Models for Cognitive Neuroscience and Aging. Keinan A, Kaufman A, Hilgetag CC, Meilijson I, Ruppin E.  :163 (2007)