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2017
Association between rs2294020 in X-linked CCDC22 and susceptibility to autoimmune diseases with focus on systemic lupus erythematosus.. Immunology letters. D'Amico F, Skarmoutsou E, Lo LJ, Granata M, Trovato C, Rossi GA, Bellocchi C, Marchini M, Scorza R, Mazzarino MC et al..  181:58-62 (2017)   Abstract
Utilizing Rare and X-Linked Variants for Inference of Population Size History and Association Studies of Complex Diseases. Gao F.   (2017)   Abstract
2016
Explosive genetic evidence for explosive human population growth.. Current opinion in genetics & development. Gao F, Keinan A.  41:130-139 (2016)   Abstract
The genetic history of Cochin Jews from India.. Human genetics. Waldman YY, Biddanda A, Dubrovsky M, Campbell CL, Oddoux C, Friedman E, Atzmon G, Halperin E, Ostrer H, Keinan A.   (2016)   Abstract
Positive Selection on a Regulatory Insertion-Deletion Polymorphism in FADS2 Influences Apparent Endogenous Synthesis of Arachidonic Acid.. Molecular Biology and Evolution. Kothapalli KSD, Ye K, Gadgil MS, Carlson SE, O'Brien KO, Zhang JY, Park HG, Ojukwu K, Zou J, Hyon SS et al..  33(7):1726-39 (2016)   Abstract
Clustered mutations in hominid genome evolution are consistent with APOBEC3G enzymatic activity. Genome Research. Pinto Y, Gabay O, Arbiza L, Sams AJ, Keinan A, Levanon EY.   (2016)  
The Genetics of Bene Israel from India Reveals Both Substantial Jewish and Indian Ancestry.. PloS one. Waldman YY, Biddanda A, Davidson NR, Billing-Ross P, Dubrovsky M, Campbell CL, Oddoux C, Friedman E, Atzmon G, Halperin E et al..  11(3):e0152056 (2016)   Abstract
Indigenous Arabs are descendants of the earliest split from ancient Eurasian populations.. Genome research. Rodriguez-Flores JL, Fakhro K, Agosto-Perez F, Ramstetter MD, Arbiza L, Vincent TL, Robay A, Malek JA, Suhre K, Chouchane L et al..  26(2):151-62 (2016)   Abstract
Inference of Super-exponential Human Population Growth via Efficient Computation of the Site Frequency Spectrum for Generalized Models. Genetics. Gao F, Keinan A.  202:235–245 (2016)   Abstract
Mitochondrial DNA variants correlate with symptoms in myalgic encephalomyelitis/chronic fatigue syndrome.. Journal of translational medicine. Billing-Ross P, Germain A, Ye K, Keinan A, Gu Z, Hanson MR.  14(1):19 (2016)   Abstract
2015
X-inactivation informs variance-based testing for X-linked association of a quantitative trait. BMC Genomics. Ma L, Hoffman G, Keinan A.  16:241 (2015)  
Strong Constraint on Human Genes Escaping X-Inactivation Is Modulated by their Expression Level and Breadth in Both Sexes. Molecular Biology and Evolution. Slavney A, Arbiza L, Clark AG, Keinan A.  33(2):384-393 (2015)   Abstract
XWAS: a toolset for genetic data analysis and association studies of the X chromosome. Journal of Heredity. Gao F, Chang D, Biddanda A, Ma L, Guo Y, Zhou Z, Keinan A.  106(5):6 (2015)  
Biological Knowledge-Driven Analysis of Epistasis in Human GWAS with Application to Lipid Traits. Epistasis. Ma L, Keinan A, Clark AG.  1253:35-45 (2015)   Abstract
Population Genomic Analysis of 962 Whole Genome Sequences of Humans Reveals Natural Selection in Non-Coding Regions. PLoS ONE. Yu F, Lu J, Liu X, Gazave E, Chang D, Raj S, Hunter-Zinck H, Blekhman R, Arbiza L, Van Hout C et al..  10:e0121644 (2015)   Abstract
2014
Principal component analysis characterizes shared pathogenetics from genome-wide association studies.. PLoS computational biology. Chang D, Keinan A.  10(9):e1003820 (2014)   Abstract
Reply to Just et al.: Mitochondrial DNA heteroplasmy could be reliably detected with massively parallel sequencing technologies.. Proceedings of the National Academy of Sciences of the United States of America. Ye K, Lu J, Ma F, Keinan A, Gu Z.  111(43):E4548-50 (2014)  
The utility of ancient human DNA for improving allele age estimates, with implications for demographic models and tests of natural selection.. Journal of human evolution. Sams AJ, Hawks J, Keinan A.   (2014)   Abstract
Rare LPL gene variants attenuate triglyceride reduction and HDL cholesterol increase in response to fenofibric acid therapy in individuals with mixed dyslipidemia.. Atherosclerosis. Gao F, Ballantyne C, Ma L, Virani SS, Keinan A, Brautbar A.  234(2):249-253 (2014)   Abstract
Contrasting X-linked and autosomal diversity across 14 human populations.. American journal of human genetics. Arbiza L, Gottipati S, Siepel A, Keinan A.  94(6):827-44 (2014)   Abstract
Extensive pathogenicity of mitochondrial heteroplasmy in healthy human individuals.. Proceedings of the National Academy of Sciences of the United States of America. Ye K, Lu J, Ma F, Keinan A, Gu Z.   (2014)   Abstract
Neutral genomic regions refine models of recent rapid human population growth.. Proceedings of the National Academy of Sciences of the United States of America. Gazave E, Ma L, Chang D, Coventry A, Gao F, Muzny D, Boerwinkle E, Gibbs RA, Sing CF, Clark AG et al..  111(2):757-62 (2014)   Abstract
Accounting for eXentricities: Analysis of the X Chromosome in GWAS Reveals X-Linked Genes Implicated in Autoimmune Diseases.. PloS one. Chang D, Gao F, Slavney A, Ma L, Waldman YY, Sams AJ, Billing-Ross P, Madar A, Spritz R, Keinan A.  9(12):e113684 (2014)   Abstract
Analysis of Multiple Association Studies Provides Evidence of an Expression QTL Hub in Gene-Gene Interaction Network Affecting HDL Cholesterol Levels.. PloS one. Ma L, Ballantyne C, Brautbar A, Keinan A.  9(3):e92469 (2014)   Abstract
High burden of private mutations due to explosive human population growth and purifying selection. BMC Genomics. Gao F, Keinan A.  15(Suppl 4)(S3) (2014)   Abstract