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Journal Article
Accounting for eXentricities: Analysis of the X Chromosome in GWAS Reveals X-Linked Genes Implicated in Autoimmune Diseases.. PloS one. Chang D, Gao F, Slavney A, Ma L, Waldman YY, Sams AJ, Billing-Ross P, Madar A, Spritz R, Keinan A.  9(12):e113684 (2014)   Abstract
Analysis of Multiple Association Studies Provides Evidence of an Expression QTL Hub in Gene-Gene Interaction Network Affecting HDL Cholesterol Levels.. PloS one. Ma L, Ballantyne C, Brautbar A, Keinan A.  9(3):e92469 (2014)   Abstract
Gene-based testing of interactions in association studies of quantitative traits. PLoS Genet.. Ma L, Clark AG, Keinan A.  9:e1003321 (2013)   Abstract
Interaction between SNPs in the RXRA and near ANGPTL3 gene region inhibits apoB reduction after statin-fenofibric acid therapy in individuals with mixed dyslipidemia. J. Lipid Res.. Ma L, Ballantyne CM, Belmont JW, Keinan A, Brautbar A.  53:2425–2428 (2012)   Abstract
Knowledge-driven analysis identifies a gene-gene interaction affecting high-density lipoprotein cholesterol levels in multi-ethnic populations. PLoS Genet.. Ma L, Brautbar A, Boerwinkle E, Sing CF, Clark AG, Keinan A.  8:e1002714 (2012)   Abstract
Neutral genomic regions refine models of recent rapid human population growth.. Proceedings of the National Academy of Sciences of the United States of America. Gazave E, Ma L, Chang D, Coventry A, Gao F, Muzny D, Boerwinkle E, Gibbs RA, Sing CF, Clark AG et al..  111(2):757-62 (2014)   Abstract
Rare LPL gene variants attenuate triglyceride reduction and HDL cholesterol increase in response to fenofibric acid therapy in individuals with mixed dyslipidemia.. Atherosclerosis. Gao F, Ballantyne C, Ma L, Virani SS, Keinan A, Brautbar A.  234(2):249-253 (2014)   Abstract
X-inactivation informs variance-based testing for X-linked association of a quantitative trait. BMC Genomics. Ma L, Hoffman G, Keinan A.  16:241 (2015)  
XWAS: a toolset for genetic data analysis and association studies of the X chromosome. Journal of Heredity. Gao F, Chang D, Biddanda A, Ma L, Guo Y, Zhou Z, Keinan A.  106(5):6 (2015)  
Book Chapter
Biological Knowledge-Driven Analysis of Epistasis in Human GWAS with Application to Lipid Traits. Epistasis. Ma L, Keinan A, Clark AG.  1253:35-45 (2015)   Abstract