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Journal Article
Accounting for eXentricities: Analysis of the X Chromosome in GWAS Reveals X-Linked Genes Implicated in Autoimmune Diseases.. PloS one. Chang D, Gao F, Slavney A, Ma L, Waldman YY, Sams AJ, Billing-Ross P, Madar A, Spritz R, Keinan A.  9(12):e113684 (2014)   Abstract
Analysis of Multiple Association Studies Provides Evidence of an Expression QTL Hub in Gene-Gene Interaction Network Affecting HDL Cholesterol Levels.. PloS one. Ma L, Ballantyne C, Brautbar A, Keinan A.  9(3):e92469 (2014)   Abstract
Association between rs2294020 in X-linked CCDC22 and susceptibility to autoimmune diseases with focus on systemic lupus erythematosus.. Immunology letters. D'Amico F, Skarmoutsou E, Lo LJ, Granata M, Trovato C, Rossi GA, Bellocchi C, Marchini M, Scorza R, Mazzarino MC et al..  181:58-62 (2017)   Abstract
Demographic history and rare allele sharing among human populations.. Proceedings of the National Academy of Sciences of the United States of America. Gravel S, Henn BM, Gutenkunst RN, Indap AR, Marth GT, Clark AG, Yu F, Gibbs RA, Bustamante CD.  108(29):11983-8 (2011)   Abstract
Dietary adaptation of FADS genes in Europe varied across time and geography.. Nature ecology & evolution. Ye K, Gao F, Wang D, Bar-Yosef O, Keinan A.  1:167 (2017)   Abstract
The genetic history of Cochin Jews from India.. Human genetics. Waldman YY, Biddanda A, Dubrovsky M, Campbell CL, Oddoux C, Friedman E, Atzmon G, Halperin E, Ostrer H, Keinan A.   (2016)   Abstract
The Genetics of Bene Israel from India Reveals Both Substantial Jewish and Indian Ancestry.. PloS one. Waldman YY, Biddanda A, Davidson NR, Billing-Ross P, Dubrovsky M, Campbell CL, Oddoux C, Friedman E, Atzmon G, Halperin E et al..  11(3):e0152056 (2016)   Abstract
Genome sequencing and analysis of admixed genomes of African and Mexican ancestry: implications for personal ancestry reconstruction and multi-ethnic medical genomics. Genome Biology. De La Vega FM, Bryc K, Degehnardt JD, Musharoff S, Kidd JM, Seth V, Stanley S, Brisbin A, Keinan A, Clark A et al..  11:O4 (2010)   Abstract
The history of African gene flow into Southern Europeans, Levantines, and Jews. PLoS Genet.. Moorjani P, Patterson N, Hirschhorn JN, Keinan A, Hao L, Atzmon G, Burns E, Ostrer H, Price AL, Reich D.  7:e1001373 (2011)   Abstract
Indigenous Arabs are descendants of the earliest split from ancient Eurasian populations.. Genome research. Rodriguez-Flores JL, Fakhro K, Agosto-Perez F, Ramstetter MD, Arbiza L, Vincent TL, Robay A, Malek JA, Suhre K, Chouchane L et al..  26(2):151-62 (2016)   Abstract
An integrated map of genetic variation from 1,092 human genomes.. Nature. Abecasis GR, Auton A, Brooks LD, DePristo MA, Durbin RM, Handsaker RE, Kang HM, Marth GT, McVean GA.  491(7422):56-65 (2012)   Abstract
Integrating common and rare genetic variation in diverse human populations. Nature. Altshuler DM, Gibbs RA, Peltonen L, Altshuler DM, Gibbs RA, Peltonen L, Dermitzakis E, Schaffner SF, Yu F, Peltonen L et al..  467:52–58 (2010)   Abstract
Interaction between SNPs in the RXRA and near ANGPTL3 gene region inhibits apoB reduction after statin-fenofibric acid therapy in individuals with mixed dyslipidemia. J. Lipid Res.. Ma L, Ballantyne CM, Belmont JW, Keinan A, Brautbar A.  53:2425–2428 (2012)   Abstract
Knowledge-driven analysis identifies a gene-gene interaction affecting high-density lipoprotein cholesterol levels in multi-ethnic populations. PLoS Genet.. Ma L, Brautbar A, Boerwinkle E, Sing CF, Clark AG, Keinan A.  8:e1002714 (2012)   Abstract
A map of human genome variation from population-scale sequencing.. Nature. Abecasis GR, Altshuler D, Auton A, Brooks LD, Durbin RM, Gibbs RA, Hurles ME, McVean GA.  467(7319):1061-73 (2010)   Abstract
Mitochondrial DNA variants correlate with symptoms in myalgic encephalomyelitis/chronic fatigue syndrome.. Journal of translational medicine. Billing-Ross P, Germain A, Ye K, Keinan A, Gu Z, Hanson MR.  14(1):19 (2016)   Abstract
Neutral genomic regions refine models of recent rapid human population growth.. Proceedings of the National Academy of Sciences of the United States of America. Gazave E, Ma L, Chang D, Coventry A, Gao F, Muzny D, Boerwinkle E, Gibbs RA, Sing CF, Clark AG et al..  111(2):757-62 (2014)   Abstract
Population genetic inference from personal genome data: impact of ancestry and admixture on human genomic variation. Am. J. Hum. Genet.. Kidd JM, Gravel S, Byrnes J, Moreno-Estrada A, Musharoff S, Bryc K, Degenhardt JD, Brisbin A, Sheth V, Chen R et al..  91:660–671 (2012)   Abstract
Population Genomic Analysis of 962 Whole Genome Sequences of Humans Reveals Natural Selection in Non-Coding Regions. PLoS ONE. Yu F, Lu J, Liu X, Gazave E, Chang D, Raj S, Hunter-Zinck H, Blekhman R, Arbiza L, Van Hout C et al..  10:e0121644 (2015)   Abstract
Positive Selection on a Regulatory Insertion-Deletion Polymorphism in FADS2 Influences Apparent Endogenous Synthesis of Arachidonic Acid.. Molecular Biology and Evolution. Kothapalli KSD, Ye K, Gadgil MS, Carlson SE, O'Brien KO, Zhang JY, Park HG, Ojukwu K, Zou J, Hyon SS et al..  33(7):1726-39 (2016)   Abstract
Rare LPL gene variants attenuate triglyceride reduction and HDL cholesterol increase in response to fenofibric acid therapy in individuals with mixed dyslipidemia.. Atherosclerosis. Gao F, Ballantyne C, Ma L, Virani SS, Keinan A, Brautbar A.  234(2):249-253 (2014)   Abstract
The variant call format and VCFtools.. Bioinformatics (Oxford, England). Danecek P, Auton A, Abecasis G, Albers CA, Banks E, DePristo MA, Handsaker RE, Lunter G, Marth GT, Sherry ST et al..  27(15):2156-8 (2011)   Abstract
XWAS: a toolset for genetic data analysis and association studies of the X chromosome. Journal of Heredity. Gao F, Chang D, Biddanda A, Ma L, Guo Y, Zhou Z, Keinan A.  106(5):6 (2015)